FastQCFastQC Report
Wed 20 Apr 2022
EGAF00006040688

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00006040688
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences67717079
Sequences flagged as poor quality0
Sequence length100
%GC48

[OK]Per base sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[WARN]Sequence Duplication Levels

Duplication level graph

[OK]Overrepresented sequences

No overrepresented sequences

[OK]Adapter Content

Adapter graph

[FAIL]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
AAGTCGG258600.046.90912694
TAAGTCG145150.032.70409894
CAAGTCG165050.016.06058794
GAAGTCG254000.014.89566994
AAAGTCG147900.010.9634994
CTAAGTC241300.08.14173294
ATAAGTC215300.07.35671294
TTAAGTC264900.05.21630894
Produced by FastQC (version 0.11.5)