FastQCFastQC Report
Wed 20 Apr 2022
EGAF00006040702

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00006040702
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences73274081
Sequences flagged as poor quality0
Sequence length100
%GC51

[OK]Per base sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[WARN]Sequence Duplication Levels

Duplication level graph

[OK]Overrepresented sequences

No overrepresented sequences

[OK]Adapter Content

Adapter graph

[FAIL]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
CAAAAAT787700.06.6708141
CTGAAAT694150.06.371391
CTAAAAT480500.06.04495331
CGAAAAT89200.05.95403581
CTCAAAT439900.05.8977041
CGCAAAT69550.05.67649171
CTGAAAC577050.05.57923941
TGAAATC507250.05.56865452
AATCCAG562900.05.56084545
CAAAAAC631050.05.52634531
AAATCTA382250.05.471554
AAATCCA649650.05.42599874
AAAAATT1148550.05.3770412
GGAAAAT720500.05.36210971
AAAAATC691400.05.3430722
CTAAAAC325150.05.3338461
CTGAGAT711100.05.2875831
CTTAAAT374950.05.2145621
CTGGAAT688700.05.21388151
GAAAATC518050.05.17131572
Produced by FastQC (version 0.11.5)