FastQCFastQC Report
Sat 23 Apr 2022
EGAF00006040711

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00006040711
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences33343539
Sequences flagged as poor quality0
Sequence length126
%GC50

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[OK]Sequence Duplication Levels

Duplication level graph

[OK]Overrepresented sequences

No overrepresented sequences

[WARN]Adapter Content

Adapter graph

[FAIL]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
CGTCTGA1103600.09.488214120
ACACGTC1396650.09.237439120
ACGTCTG1219450.09.064135120
CACACGT1554400.08.790244120
CACGTCT1333650.08.463453120
GCACACG1700200.08.022324120
AGTCACG445850.08.008089120
AGCACAC1961850.07.7476525120
GAGCACA2153050.07.720161120
TCTGAAC1131100.07.719029120
GATCGGA3220800.07.6145034120
ATCGGAA3024050.07.5920086120
GTCTGAA1199750.07.5724397120
CGGAAGA2768700.07.5184636120
CTGAACT1126300.07.4908643120
AGAGCAC2245850.07.449253120
TCGGAAG2899300.07.363995120
AAGAGCA2528600.07.347194120
AGATCGG3447100.07.3043623120
GTCACGT424250.07.21355120
Produced by FastQC (version 0.11.5)