FastQCFastQC Report
Sat 23 Apr 2022
EGAF00006040719

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00006040719
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences50785629
Sequences flagged as poor quality0
Sequence length126
%GC54

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[WARN]Sequence Duplication Levels

Duplication level graph

[OK]Overrepresented sequences

No overrepresented sequences

[FAIL]Adapter Content

Adapter graph

[FAIL]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
ACGTAAA64500.09.023946120
CGTCTGA2821300.08.86255120
ACGTCTG3086500.08.69984120
CACGTCT3366100.08.601115120
ACACGTC3544050.08.560353120
GTCTGAA2820600.08.48395120
CACACGT3888000.08.387987120
ACCGTAC785700.08.347336120
GCACACG4262300.08.317272120
TACGTAA575800.08.253497120
CCGTACG712300.08.205036120
CGTACGT661000.08.197299120
TCTGAAC2626750.08.157472120
GTACGTA624650.08.030711120
CACCGTA885800.07.824034120
CTGAACT2562700.07.7970605120
AGCACAC4747250.07.745708120
CGTAATC485700.07.597863120
GAGCACA5162400.07.57845120
AACTCCA2197200.07.318965120
Produced by FastQC (version 0.11.5)