FastQCFastQC Report
Sat 23 Apr 2022
EGAF00006040720

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00006040720
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences50785629
Sequences flagged as poor quality0
Sequence length126
%GC54

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[OK]Sequence Duplication Levels

Duplication level graph

[OK]Overrepresented sequences

No overrepresented sequences

[FAIL]Adapter Content

Adapter graph

[FAIL]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
GCGTCGG216350.013.252476120
CGTGTAG2983000.08.819448120
TCGTGTA3133100.08.816199120
CGTCGTG3700750.08.650346120
GTGTAGG2895900.08.502676120
GTCGTGT3409850.08.480626120
TGTAGGG2764650.08.413829120
TAGGGAA2312900.08.392237120
GAGTGTA1250550.08.365106120
AGCGTCG4297200.08.352799120
GTAGGGA2512100.08.247293120
GCGTCGT3943050.08.17659120
GAGCGTC4726600.08.092703120
AGTGTAG1199000.07.7742386120
TGTAGAT1165950.07.649923120
AAGAGCG5461250.07.616938120
AGAGCGT5011950.07.4350667118-119
TAGATCT890950.07.3114333120
AGAGTGT1565550.07.291181120
AAGAGTG1720600.07.265137120
Produced by FastQC (version 0.11.5)