FastQCFastQC Report
Wed 20 Apr 2022
EGAF00006040721

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00006040721
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences71523489
Sequences flagged as poor quality0
Sequence length100
%GC51

[OK]Per base sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[OK]Overrepresented sequences

No overrepresented sequences

[OK]Adapter Content

Adapter graph

[FAIL]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
TAAGTCG171850.070.47948594
GAAGTCG320450.035.30316594
CAAGTCG172300.032.43354494
AAAGTCG138900.024.05831594
CTAAGTC254700.017.95484794
ATAAGTC218850.014.92574894
TTAAGTC256550.011.50496994
GTAAGTC254600.07.67949794
GGAAGTC559350.07.511933394
AGAAGTC605200.07.385492394
GCTAAGT198000.07.216161394
ACTAAGT178250.06.644692-93
TCTAAGT261300.06.45732994
ACAAGTC302150.06.019857494
GATAAGT185000.05.89405494
CCTAAGT225100.05.8671794
TGAAGTC636150.05.33427694
Produced by FastQC (version 0.11.5)