FastQCFastQC Report
Wed 20 Apr 2022
EGAF00006040722

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00006040722
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences71523489
Sequences flagged as poor quality0
Sequence length100
%GC51

[OK]Per base sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[WARN]Sequence Duplication Levels

Duplication level graph

[OK]Overrepresented sequences

No overrepresented sequences

[OK]Adapter Content

Adapter graph

[FAIL]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
TAAGTCG174700.069.9215894
GAAGTCG339200.032.22936294
CAAGTCG191250.028.75294194
AAAGTCG155250.022.94750294
CTAAGTC264750.017.7703594
ATAAGTC229500.015.42091494
TTAAGTC257400.011.30264194
AGAAGTC648800.07.32382894
GGAAGTC577350.06.968389594
GTAAGTC271500.06.889870694
TCTAAGT259600.06.879814694
ACTAAGT181600.06.664372492-93
GATAAGT177350.06.572314794
ACAAGTC315050.06.489445794
CCTAAGT224250.06.308583794
GCTAAGT187050.06.18123594
TGAAGTC632800.05.310524594
Produced by FastQC (version 0.11.5)