FastQCFastQC Report
Fri 22 Jul 2022
EGAF00006067929

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00006067929
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences442630587
Sequences flagged as poor quality0
Sequence length151
%GC41

[OK]Per base sequence quality

Per base quality graph

[WARN]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[OK]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[OK]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GTCTTTGATTAGGCGTCCATCTCGAAGGAGTCGCCAGCGATAACCGGAGT18664540.4216730733974334No Hit
GTCTTTGATTATGAATTGTTCGCGTTTACCTTGCGTGTACGCGCAGGAAA14072010.31791770413733295No Hit
ATCGGAAGAGCGTCGTGTAGGGAAAGAGTGTAGATCTCGGTGGTCGCCGT5056350.11423408477643231Illumina Single End PCR Primer 1 (100% over 50bp)
GTCTTTGATTAGTACGCTGGACTTTGTAGGATACCCTCGCTTTCCTGCTC4508000.1018456503549313No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)