FastQCFastQC Report
Wed 13 Jul 2022
EGAF00006067969

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00006067969
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences501968057
Sequences flagged as poor quality0
Sequence length151
%GC41

[WARN]Per base sequence quality

Per base quality graph

[WARN]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[OK]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[OK]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
CTCCACGCAAGGGCGTCCATCTCGAAGGAGTCGCCAGCGATAACCGGAGT32698830.6514125658796651No Hit
CTCCACGCAAGTGAATTGTTCGCGTTTACCTTGCGTGTACGCGCAGGAAA29839610.5944523677131113No Hit
ATCGGAAGAGCGTCGTGTAGGGAAAGAGTGTAGATCTCGGTGGTCGCCGT8424800.16783538080790666Illumina Single End PCR Primer 1 (100% over 50bp)
CTCCACGCAAGGTACGCTGGACTTTGTAGGATACCCTCGCTTTCCTGCTC5915030.11783678099660433No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)