FastQCFastQC Report
Wed 13 Jul 2022
EGAF00006067970

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00006067970
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences292871882
Sequences flagged as poor quality0
Sequence length151
%GC40

[OK]Per base sequence quality

Per base quality graph

[WARN]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[OK]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[OK]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GTCTTTGATTAGGCGTCCATCTCGAAGGAGTCGCCAGCGATAACCGGAGT17223440.5880878656695353No Hit
GTCTTTGATTATGAATTGTTCGCGTTTACCTTGCGTGTACGCGCAGGAAA11442910.3907138480436302No Hit
GTCTTTGATTAGTACGCTGGACTTTGTAGGATACCCTCGCTTTCCTGCTC4663500.1592334493893135No Hit
ATCGGAAGAGCACACGTCTGAACTCCAGTCACACTGATATATCTCGTATG3287940.11226547176693459TruSeq Adapter, Index 25 (97% over 43bp)

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)