FastQCFastQC Report
Sun 17 Jul 2022
EGAF00006067973

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00006067973
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences421851936
Sequences flagged as poor quality0
Sequence length151
%GC41

[WARN]Per base sequence quality

Per base quality graph

[WARN]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[OK]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[OK]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
CTCCACGCAAGGGCGTCCATCTCGAAGGAGTCGCCAGCGATAACCGGAGT25323660.6002973517229514No Hit
CTCCACGCAAGTGAATTGTTCGCGTTTACCTTGCGTGTACGCGCAGGAAA24121560.5718015716300991No Hit
ATCGGAAGAGCGTCGTGTAGGGAAAGAGTGTAGATCTCGGTGGTCGCCGT8380460.19865880146156303Illumina Single End PCR Primer 1 (100% over 50bp)
CTCCACGCAAGGTACGCTGGACTTTGTAGGATACCCTCGCTTTCCTGCTC4782440.11336773858020176No Hit
CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC4577510.10850987299961094No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)