FastQCFastQC Report
Fri 22 Jul 2022
EGAF00006067978

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00006067978
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences343290020
Sequences flagged as poor quality0
Sequence length151
%GC40

[OK]Per base sequence quality

Per base quality graph

[WARN]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[OK]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[OK]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
TCACTTCAAGAGGCGTCCATCTCGAAGGAGTCGCCAGCGATAACCGGAGT20014600.5830230660361172No Hit
TCACTTCAAGATGAATTGTTCGCGTTTACCTTGCGTGTACGCGCAGGAAA14288890.41623377224889907No Hit
ATCGGAAGAGCACACGTCTGAACTCCAGTCACGTCCGCACATCTCGTATG9445140.2751358749083355TruSeq Adapter, Index 18 (97% over 39bp)
TCACTTCAAGAGTACGCTGGACTTTGTAGGATACCCTCGCTTTCCTGCTC4529930.1319563557367616No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)