FastQCFastQC Report
Mon 25 Jul 2022
EGAF00006068000

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00006068000
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences342151700
Sequences flagged as poor quality0
Sequence length151
%GC40

[OK]Per base sequence quality

Per base quality graph

[WARN]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[OK]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[OK]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GTAGTCGATATGGCGTCCATCTCGAAGGAGTCGCCAGCGATAACCGGAGT14001910.4092310516066412No Hit
GTAGTCGATATTGAATTGTTCGCGTTTACCTTGCGTGTACGCGCAGGAAA10529030.3077298753739935No Hit
ATCGGAAGAGCACACGTCTGAACTCCAGTCACGTGAAACGATCTCGTATG5088550.1487220434678536TruSeq Adapter, Index 19 (97% over 39bp)
GTAGTCGATATGTACGCTGGACTTTGTAGGATACCCTCGCTTTCCTGCTC3754800.10974079626083985No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)