FastQCFastQC Report
Fri 22 Jul 2022
EGAF00006068016

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00006068016
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences349212646
Sequences flagged as poor quality0
Sequence length151
%GC40

[OK]Per base sequence quality

Per base quality graph

[WARN]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[OK]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[OK]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
TCACTTCAAGAGGCGTCCATCTCGAAGGAGTCGCCAGCGATAACCGGAGT21915770.6275766428000434No Hit
TCACTTCAAGATGAATTGTTCGCGTTTACCTTGCGTGTACGCGCAGGAAA16094930.4608919575037383No Hit
ATCGGAAGAGCACACGTCTGAACTCCAGTCACGTCCGCACATCTCGTATG9207030.26365110500608846TruSeq Adapter, Index 18 (97% over 39bp)
TCACTTCAAGAGTACGCTGGACTTTGTAGGATACCCTCGCTTTCCTGCTC5021450.1437934753370873No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)