FastQCFastQC Report
Wed 13 Jul 2022
EGAF00006068017

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00006068017
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences349212646
Sequences flagged as poor quality0
Sequence length151
%GC41

[WARN]Per base sequence quality

Per base quality graph

[WARN]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[OK]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[OK]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
TCACTTCAAGAGGCGTCCATCTCGAAGGAGTCGCCAGCGATAACCGGAGT18986000.543680196506973No Hit
TCACTTCAAGATGAATTGTTCGCGTTTACCTTGCGTGTACGCGCAGGAAA15669840.44871914518238837No Hit
ATCGGAAGAGCGTCGTGTAGGGAAAGAGTGTAGATCTCGGTGGTCGCCGT9585760.2744963594474182Illumina Single End PCR Primer 1 (100% over 50bp)
TCACTTCAAGAGTACGCTGGACTTTGTAGGATACCCTCGCTTTCCTGCTC4240270.1214237241568852No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)