FastQCFastQC Report
Sat 4 May 2024
EGAF00006068026

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00006068026
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences493278413
Total Bases74.4 Gbp
Sequences flagged as poor quality0
Sequence length151
%GC40

[OK]Per base sequence quality

Per base quality graph

[WARN]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[OK]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[OK]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
AGAAATGGAGGGGCGTCCATCTCGAAGGAGTCGCCAGCGATAACCGGAGT21208680.42995354025354443No Hit
AGAAATGGAGGTGAATTGTTCGCGTTTACCTTGCGTGTACGCGCAGGAAA16330520.3310609094097941No Hit
ATCGGAAGAGCACACGTCTGAACTCCAGTCACGCCAATATCTCGTATGCC5595080.11342641097898602TruSeq Adapter, Index 6 (100% over 50bp)

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.12.1)