FastQCFastQC Report
Fri 22 Jul 2022
EGAF00006068044

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00006068044
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences319195814
Sequences flagged as poor quality0
Sequence length151
%GC41

[WARN]Per base sequence quality

Per base quality graph

[FAIL]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[OK]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[OK]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
ATCGGAAGAGCACACGTCTGAACTCCAGTCACTGACCAATCTCGTATGCC15145030.47447458067228915TruSeq Adapter, Index 4 (100% over 50bp)
CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC9903670.3102694197612504No Hit
AGTGATTAGCAGGCGTCCATCTCGAAGGAGTCGCCAGCGATAACCGGAGT9525950.2984359312431334No Hit
AGTGATTAGCATGAATTGTTCGCGTTTACCTTGCGTGTACGCGCAGGAAA6153220.19277257815166712No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)