EGAF00006070384 FastQC Report

Basic Statistics

Measure	Value
Filename	EGAF00006070384
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	8803444
Sequences flagged as poor quality	0
Sequence length	51
%GC	42

Per base quality graph

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
GATCGGAAGAGCACACGTCTGAACTCCAGTCACGATCAGATCTCGTATGCC	38804	0.4407820393927649	TruSeq Adapter, Index 9 (100% over 51bp)

Adapter graph

Kmer graph

Sequence	Count	Obs/Exp Max	Max Obs/Exp Position
CTCGTAT	4485	40.932495	42
CGATCAG	4555	40.45623	33
CGTATGC	4555	40.4514	44
TCGTATG	4560	40.35771	43
TCTCGTA	4575	40.127724	41
ATCTCGT	4645	39.523	40
GTCACGA	4690	39.0967	29
ACGATCA	4775	38.7321	32
GATCGGA	4880	38.49904	1
TCACGAT	4825	38.049862	30
AGTCACG	4880	37.757835	28
ATCGGAA	5020	37.697433	2
TCGGAAG	5050	37.473484	3
ACACGTC	4990	37.46653	13
CGTCTGA	5025	37.116024	16
CACGATC	5075	36.35385	31
ACGTCTG	5170	36.292633	15
CGGAAGA	5270	35.779613	4
GTATGCC	5180	35.614117	45
CACGTCT	5355	35.08084	14