FastQCFastQC Report
Sat 23 Apr 2022
EGAF00006070401

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00006070401
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences5794533
Sequences flagged as poor quality0
Sequence length36
%GC40

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[OK]Sequence Duplication Levels

Duplication level graph

[OK]Overrepresented sequences

No overrepresented sequences

[OK]Adapter Content

Adapter graph

[FAIL]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
CGTTGGA16250.012.2964141
AACGGGA12900.011.9746438
AAACGGG16350.011.7422757
CCCCGAT900.00396317511.6851891
ACGGGAT9600.011.5604729
GGAAACG17100.010.9696145
CGGGATT9350.010.90717610
GAAACGG17750.010.7364416
CCATACG1809.09027E-610.0158771
CACCGCG3152.3646862E-119.99936730
CCCAAAG43250.09.483241
CCACGTA1603.1000862E-49.3898841
GCCACCG8500.09.35162328
CGGGAAT5000.09.29836810
CCCCGAA2601.0099211E-79.2454241
AAGCGGC4300.09.0736573
AACGGTG1350.00781099878.8882497
CCCTAAT8400.08.7638921
ACAGGCG12450.08.55271618
CCCGAGT9000.08.5134951
Produced by FastQC (version 0.11.5)