FastQCFastQC Report
Sat 23 Apr 2022
EGAF00006070402

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00006070402
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences6767949
Sequences flagged as poor quality0
Sequence length51
%GC41

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[OK]Sequence Duplication Levels

Duplication level graph

[OK]Overrepresented sequences

No overrepresented sequences

[OK]Adapter Content

Adapter graph

[FAIL]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
CGTTGGA20850.015.8221651
GAAACGG21950.014.4458136
AACGGGA17650.014.2694848
AAACGGG22050.014.1759037
GGAAACG22350.013.9451785
ACGGGAT11850.013.473239
CGGGATT11700.013.06937410
CGGGAAT8400.011.77891110
GCCACCG14100.010.36635328
ACGGGAA9550.010.1250429
AACGGGT5350.010.0877068
ACCGCGC4752.7284841E-119.94221331
CACCGCG4752.7284841E-119.94162730
TGCGATC3258.126317E-79.68707121
GCGTGAG16450.09.56929422
CGTGAGC16750.09.53216123
CGATATC1900.00446484059.5138321
ACCGTGC6050.09.29270431
GTTGGAA39550.09.2509812
CTACGCT2200.0014310089.2435531
Produced by FastQC (version 0.11.5)