FastQCFastQC Report
Sat 23 Apr 2022
EGAF00006070403

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00006070403
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences6638101
Sequences flagged as poor quality0
Sequence length51
%GC43

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[OK]Sequence Duplication Levels

Duplication level graph

[OK]Overrepresented sequences

No overrepresented sequences

[OK]Adapter Content

Adapter graph

[FAIL]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
CGTTGGA16900.014.6811781
AACGGGA14650.013.206148
AAACGGG18600.012.699647
ACGGGAT10900.012.3833979
GAAACGG19600.011.937736
GGAAACG20400.011.35935
CGGGATT9800.011.01869710
TACACGG2605.9043905E-610.38534930
ACCGCGC4803.274181E-119.84444631
CGGGAAT6150.09.51071710
CACCGCG5302.3646862E-119.34028230
CGGATCT1950.00572998549.2300314
CGCGCCC4304.8441507E-88.89711733
CGGGATA3104.746266E-58.70832410
CCATCGA4001.4181478E-68.4583621
CCGCGCC5606.9485395E-108.43930432
CGCCCGG6155.820766E-118.414721535
CGCCACC9200.08.31417727
GTTGGAA35650.08.1412492
AACGGGT4702.043198E-78.1370338
Produced by FastQC (version 0.11.5)