FastQCFastQC Report
Sat 23 Apr 2022
EGAF00006070404

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00006070404
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences7452315
Sequences flagged as poor quality0
Sequence length51
%GC41

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[OK]Sequence Duplication Levels

Duplication level graph

[OK]Overrepresented sequences

No overrepresented sequences

[OK]Adapter Content

Adapter graph

[FAIL]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
CGTTGGA24050.013.8824621
AACGGGA20050.012.2298478
ACGGGAT15750.012.1418589
AAACGGG25150.011.8070637
CGGGATT13850.011.69602410
GAAACGG26600.011.33243756
GGAAACG27200.010.91704755
GCCACCG16650.010.54073428
CGTGAGC18100.09.82075423
GCGTGAG17900.09.67907822
CCCGATG2109.492122E-49.6681421
AACGGGT6250.09.3584138
ACAGGCG25400.09.21128418
GTTGGAA44450.09.1111612
CACCGCG7300.08.938519530
ACCGCGC6800.08.93404831
CGGCCTA2607.013678E-48.65313339
CCCAAAG79250.08.3973561
AGGCGTG24100.08.3095620
CCACCGC14700.08.26545729
Produced by FastQC (version 0.11.5)