FastQCFastQC Report
Sat 23 Apr 2022
EGAF00006070419

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00006070419
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences6259665
Sequences flagged as poor quality0
Sequence length51
%GC41

[OK]Per base sequence quality

Per base quality graph

[FAIL]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[OK]Sequence Duplication Levels

Duplication level graph

[OK]Overrepresented sequences

No overrepresented sequences

[OK]Adapter Content

Adapter graph

[WARN]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
TTCGCCG550.00394609720.4477089
CGTTGGA18150.013.9189031
AAACGGG20600.013.320797
AACGGGA17200.013.2077938
ACGGGAT12800.013.1791879
CGGGATT11800.012.96176810
GAAACGG21000.012.8567486
GGAAACG21800.011.993965
CCCGCAT2452.817047E-611.0478761
CGCGCCC2707.925264E-710.82971333
TATGCCG1700.001812161210.6072343
ACCGCGC3552.6371708E-79.50386531
ACGCTAG1900.0046283749.4724127
CCGCGCC3858.529787E-89.34752432
ACAGGCG21100.09.27415118
AACGGGT4407.2541297E-99.2014688
CGCCCGG6200.09.06954935
GCGTGAG15850.08.94201422
GCCACCG13100.08.93009628
CCCGGAA3552.5897352E-68.8953551
Produced by FastQC (version 0.11.5)