FastQCFastQC Report
Sat 23 Apr 2022
EGAF00006070450

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00006070450
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences9888482
Sequences flagged as poor quality0
Sequence length36
%GC39

[OK]Per base sequence quality

Per base quality graph

[WARN]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[OK]Sequence Duplication Levels

Duplication level graph

[OK]Overrepresented sequences

No overrepresented sequences

[OK]Adapter Content

Adapter graph

[FAIL]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
CGTTGGA22500.012.0750071
ACGGGAT14650.011.77430259
CCCCGAT2259.0403773E-1011.3411671
AACGGGA20300.011.3049968
CGGGATT12650.011.26434410
AAACGGG24400.010.6959967
GAAACGG25150.010.6155836
CGGGATA3450.010.4343410
GGAAACG25700.09.9234645
GCGTGAG15500.09.87044922
ACAGGCG21150.09.78657118
GATCGGA1705.3716176E-59.7125911
GATTTCG8000.09.5637395
CCCTAAA24100.09.5294041
CGTTAAC1450.0013317059.316781
CCCAAAG77950.09.1275371
CGTGAGC15900.08.96179323
CCGAGTA10200.08.6784722
GAGCCAC46450.08.52493426
CCCAAGT32050.08.47699451
Produced by FastQC (version 0.11.5)