FastQCFastQC Report
Sat 23 Apr 2022
EGAF00006070473

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00006070473
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences7284063
Sequences flagged as poor quality0
Sequence length36
%GC41

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[OK]Sequence Duplication Levels

Duplication level graph

[OK]Overrepresented sequences

No overrepresented sequences

[OK]Adapter Content

Adapter graph

[FAIL]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
CGTTGGA18550.013.3627621
CCCCGAA1754.155845E-812.0183891
CCCAACG1501.0224285E-612.0183881
CGGGATT11550.011.81849610
AACGGGA16650.011.5319188
ACGGGAT12600.011.4288749
GAAACGG20850.011.2251696
AAACGGG21300.011.0567077
GGAAACG21750.010.48395
CACCGCG4600.010.43355630
CGTAGAA2609.66611E-99.82272151
CCCCGAT1409.5871015E-49.6576341
CCCAAGT23750.09.4249461
AACGGGT4800.09.3753138
GATTTCG6450.09.3033385
GCCACCG10500.09.28462228
ACAGGCG19000.09.23575618
CGTGAGC13100.09.04473823
GCGTGAG12800.09.02237622
CCCAAAG58700.08.8551161
Produced by FastQC (version 0.11.5)