FastQCFastQC Report
Sat 23 Apr 2022
EGAF00006070484

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00006070484
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences11889813
Sequences flagged as poor quality0
Sequence length51
%GC41

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[OK]Sequence Duplication Levels

Duplication level graph

[OK]Overrepresented sequences

No overrepresented sequences

[OK]Adapter Content

Adapter graph

[FAIL]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
CGTTGGA34400.013.74504851
ACGGGAT21950.012.9147829
AACGGGA30900.012.5233658
AAACGGG36500.012.3269927
CGGGATT21400.012.09024510
GAAACGG37050.011.9618426
GGAAACG40750.011.1516755
ACGTCCG2656.1909486E-711.039350531
CGTATGC4803.274181E-119.8434145
ACGCCCG5950.09.83283334
ACCGCGC7700.09.64426831
CTCGTAT3806.941809E-89.47363643
CGTCCGC3155.6639838E-69.28707332
AACGGGT7400.09.1209618
CCGCGCC8450.09.05457932
CGGGAAT13800.08.96674210
CGCGCCC6301.8189894E-128.92987833
TCCGCAC3807.0201895E-78.88239334
CACCGCG8200.08.78173530
CGCCCGG11950.08.66220935
Produced by FastQC (version 0.11.5)