FastQCFastQC Report
Sat 23 Apr 2022
EGAF00006070487

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00006070487
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences4832307
Sequences flagged as poor quality0
Sequence length51
%GC40

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[OK]Sequence Duplication Levels

Duplication level graph

[OK]Overrepresented sequences

No overrepresented sequences

[OK]Adapter Content

Adapter graph

[FAIL]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
CGTTGGA15700.014.8285751
ACGCCCG2203.610694E-914.30932334
ACGGGAT9100.013.8375869
AACGGGA13150.013.6797438
AAACGGG16050.013.5897177
CGGGATT8350.013.46471710
GAAACGG16900.012.9108866
CGCCCGG4150.012.46319535
GGAAACG17800.012.1832945
CGGGAAT5400.011.65944810
ACCGCGC2951.7573257E-811.43359931
CACCGCG3153.787136E-911.421530
CCCCGGT1802.2498734E-411.3013911
CGTGAGC11450.010.40840323
CCGCGCC3309.1326E-810.22094432
GCGTGAG11000.010.22094422
CGCGCCC2751.1603943E-59.81210733
CCGGCTA4601.5279511E-109.77736638
CGGCTAA4905.0931703E-119.63768939
GCCCGGC8650.09.61911936
Produced by FastQC (version 0.11.5)