FastQCFastQC Report
Sat 23 Apr 2022
EGAF00006070499

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00006070499
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences6346261
Sequences flagged as poor quality0
Sequence length36
%GC40

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[OK]Sequence Duplication Levels

Duplication level graph

[OK]Overrepresented sequences

No overrepresented sequences

[OK]Adapter Content

Adapter graph

[WARN]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
GATCGGA1056.580704E-512.8939081
CGTTGGA13750.012.3625221
AAACGGG15150.011.3838817
ACGGGAT9800.011.1712549
AACGGGA12550.011.1133348
GAAACGG15650.010.9287426
GGAAACG15300.010.786685
GCGTGAG9000.010.4982522
CGTGAGC10050.09.99833223
ACAGGCG13400.09.96086818
CACCGCG2803.248715E-99.64155330
CCCGTGT2557.345807E-89.4386781
CGTTAAA2905.644324E-99.3369681
CGGGATT9100.09.064136510
CCCATAA11900.08.9751711
CGGGATA1851.3649976E-48.91715110
AACGGGT2905.87861E-88.791368
CCCAAGT18550.08.7581251
AGGTCGG2403.2264525E-68.751925
CCCGCAT1550.00239543928.7345831
Produced by FastQC (version 0.11.5)