FastQCFastQC Report
Sat 23 Apr 2022
EGAF00006070502

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00006070502
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences6347037
Sequences flagged as poor quality0
Sequence length51
%GC42

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[OK]Sequence Duplication Levels

Duplication level graph

[OK]Overrepresented sequences

No overrepresented sequences

[OK]Adapter Content

Adapter graph

[FAIL]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
CCGTACG5900.027.44953533
CGTACGT5950.027.21886834
ACCGTAC6350.026.21274832
GTACGTA7200.023.11818535
CTCGTAT7200.022.4933744
TCTCGTA7100.022.4933743
GATCGGA7200.021.6309531
CGTAATC7800.020.1863638
CGTATGC4250.019.61274745
TCGTATG8300.019.54249645
CACCGTA8550.018.94178631
GTCACCG8700.018.87374929
ATCTCGT8550.018.41562542
TACGTAA9450.017.13780436
ACACGTC9650.017.0157113
ACGTAAT9650.016.78261837
ATCGGAA9650.016.5821842
TCGGAAG10250.016.0512813
CGTCTGA10200.015.6571516
AATCTCG10350.015.21290941
Produced by FastQC (version 0.11.5)