FastQCFastQC Report
Sat 23 Apr 2022
EGAF00006070515

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00006070515
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences8897677
Sequences flagged as poor quality0
Sequence length36
%GC41

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[OK]Sequence Duplication Levels

Duplication level graph

[OK]Overrepresented sequences

No overrepresented sequences

[OK]Adapter Content

Adapter graph

[FAIL]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
CGTTGGA18300.011.3964741
ACGGGAT12650.011.0271939
CACCGCG6200.010.88699530
CGTGAGC17100.010.87776323
AACGGGA17400.010.8613568
GCGTGAG16300.010.859282522
GAAACGG21400.010.583126
CGTCTGA4300.010.46413716
AAACGGG21300.010.3511437
GATCGGA4250.010.2380181
CGGGATT12550.010.03940810
CCCCGAT1809.2359405E-610.0026611
ACAGGCG22700.09.91096618
CCCAAAG80100.09.8902711
GGAAACG21700.09.8165695
ATCGGAA5100.09.7071552
GAGCCAC48450.09.65994926
CGTTCGA1250.00414175459.6008825
GCCACCG15800.09.58878828
CCCTAAA21050.09.5512341
Produced by FastQC (version 0.11.5)