FastQCFastQC Report
Sat 23 Apr 2022
EGAF00006070521

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00006070521
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences9284283
Sequences flagged as poor quality0
Sequence length36
%GC40

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[OK]Sequence Duplication Levels

Duplication level graph

[OK]Overrepresented sequences

No overrepresented sequences

[OK]Adapter Content

Adapter graph

[FAIL]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
CGTTGGA22650.012.2024961
CGAAACG1602.2378717E-611.2618675
ACGGGAT12750.011.1730169
AAACGGG23100.011.0355487
AACGGGA18150.010.6578628
GAAACGG24100.010.6431886
GGAAACG23300.010.56907755
CGGGATT12050.010.45319910
AACGGGT4900.010.4049458
CCCCGAA2003.1705593E-59.0126041
CACCGCG6200.08.96376230
GCGTGAG15200.08.7801822
GCCACCG14550.08.76022528
CCCGAGG3801.05501385E-108.6963731
CGGGATA2601.026232E-68.65117110
CGTGAGC15950.08.64936323
CCCTAAA21150.08.5935781
ATAGGCG2854.2357533E-78.41844918
CCCAAGT28450.08.1308791
CCCAAAG69150.08.1241611
Produced by FastQC (version 0.11.5)