FastQCFastQC Report
Sat 23 Apr 2022
EGAF00006070536

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00006070536
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences14802594
Sequences flagged as poor quality0
Sequence length36
%GC41

[OK]Per base sequence quality

Per base quality graph

[FAIL]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[OK]Sequence Duplication Levels

Duplication level graph

[OK]Overrepresented sequences

No overrepresented sequences

[OK]Adapter Content

Adapter graph

[FAIL]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
GCGTGAG26950.011.24227622
CGTTGGA33950.010.7656841
ACAGGCG38100.010.39302818
CGTGAGC28050.010.15973523
ACGGGAT23600.09.9140439
CCCAAAG120700.09.8071451
AAACGGG38250.09.8027247
AGGCGTG34650.09.78291620
CACCGCG11300.09.55651730
GAAACGG38350.09.5034036
GAGCCAC78500.09.47674226
CGGGATT22650.09.46904210
GCCACCG27000.09.4434528
AACGGGA31450.09.4424098
CAGGCGT34700.09.25012219
GGCGTGA35100.08.93104621
CCACCGC21000.08.92763129
GGAAACG39200.08.8764675
CCCTAAA36100.08.749581
GGGATTA120350.08.37454812
Produced by FastQC (version 0.11.5)