FastQCFastQC Report
Sat 23 Apr 2022
EGAF00006070538

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00006070538
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences7608916
Sequences flagged as poor quality0
Sequence length51
%GC41

[OK]Per base sequence quality

Per base quality graph

[FAIL]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[OK]Sequence Duplication Levels

Duplication level graph

[OK]Overrepresented sequences

No overrepresented sequences

[OK]Adapter Content

Adapter graph

[FAIL]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
CGTTGGA23800.013.3337961
CGCGCCT2451.6225385E-812.85673933
ACGGGAT15450.012.8149639
AAACGGG25400.011.603897
GAAACGG25850.011.575816
CGGGATT15150.011.43513510
AACGGGA20900.011.3033988
AACGGGT4303.6379788E-1210.9879558
GGAAACG27300.010.8795655
CACCGCG5700.010.65730
ACCGCGC5800.010.4737431
CCGCGCC5500.010.22695232
CCGGCTA9350.09.1450638
ATAGGCG3206.938457E-69.13961718
CCCGAAG4304.8370566E-88.8979931
ACAGGCG24450.08.83338218
GCGTGAG16750.08.59685822
GCCACCG16100.08.524240528
CCCCGAA3451.7851093E-58.4807811
CGCGCCC3755.613205E-68.39973533
Produced by FastQC (version 0.11.5)