FastQCFastQC Report
Sat 23 Apr 2022
EGAF00006070554

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00006070554
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences5846250
Sequences flagged as poor quality0
Sequence length36
%GC40

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[OK]Sequence Duplication Levels

Duplication level graph

[OK]Overrepresented sequences

No overrepresented sequences

[OK]Adapter Content

Adapter graph

[FAIL]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
CGTTGGA15750.013.3693951
ACGGGAT9850.012.7893989
CCTTCGA1951.1204975E-912.34098151
AACGGGA13500.012.1087638
AAACGGG17800.012.0482267
ACGGGTA2301.05501385E-1011.7368549
CGGGATT9700.011.5956910
CGAAACG1703.7614154E-711.4728785
GAAACGG18200.011.3758966
AACGGGT3600.011.2478188
GGAAACG17250.011.0456835
CGGGATA1807.910603E-710.83123310
CACTGCG4150.09.75814530
CCCAAGT17650.09.4589421
CCCCGGT1603.0656235E-49.4003571
GCCACCG8300.09.21602628
GAGCCAC28750.09.18177126
CACCGCG3451.4733814E-109.12960230
CCCAAAG46350.09.0535481
GCGTGAG8700.08.96393222
Produced by FastQC (version 0.11.5)