FastQCFastQC Report
Sat 23 Apr 2022
EGAF00006070555

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00006070555
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences9075021
Sequences flagged as poor quality0
Sequence length51
%GC41

[OK]Per base sequence quality

Per base quality graph

[WARN]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[OK]Sequence Duplication Levels

Duplication level graph

[OK]Overrepresented sequences

No overrepresented sequences

[OK]Adapter Content

Adapter graph

[FAIL]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
CGGCCGA1605.0338003E-614.06291839
CGTTGGA26750.013.8168071
AACGGGA22650.012.7139998
AAACGGG28000.012.4541497
GAAACGG28800.012.3460236
CGCGCCC5150.012.23162233
GGAAACG30150.012.0174685
ACCGCGC6050.011.89947531
ACGGGAT16300.011.5939049
CGGGATT15950.011.1431210
ACGGGTT4850.011.1328799
CACCGCG7200.010.93758530
CGACTAA1700.001814850710.605441
GATTTCG10300.010.4876575
CGGGAAT10100.010.246531510
GGCCGAT2251.6453207E-410.00029840
CCGCGCC7500.09.89887632
AACGGGT6500.09.6913678
GCCACCG18200.09.64293128
CGTGAGC22400.09.64176323
Produced by FastQC (version 0.11.5)