FastQCFastQC Report
Sat 23 Apr 2022
EGAF00006070558

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00006070558
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences8588803
Sequences flagged as poor quality0
Sequence length51
%GC41

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[OK]Sequence Duplication Levels

Duplication level graph

[OK]Overrepresented sequences

No overrepresented sequences

[OK]Adapter Content

Adapter graph

[FAIL]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
CGTATGC4050.014.99916745
CTCGTAT4500.011.99898443
AACGGGA20650.011.767868
CGCCTAA1350.004011486711.66635940
ACGGGAT15500.011.6129359
TCTCGTA4650.011.6119242
CGTTGGA25750.011.5389161
AAACGGG26250.011.4852777
GAAACGG27350.011.1054816
CGGGATT15750.010.71475210
TATCTCG5200.010.3843440
GGAAACG29050.010.0692265
CCCCGTT3704.568028E-89.7338931
CCCTCGA2555.3869167E-59.7100351
ACGCCCG4956.184564E-119.54503534
CGGGAAT8100.09.44485510
ACGAGTG6700.09.40235331
CGCCCGG9100.09.39552135
ATCTCGT6150.09.14599341
ACAGGCG27300.09.06516718
Produced by FastQC (version 0.11.5)