FastQCFastQC Report
Sat 23 Apr 2022
EGAF00006070569

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00006070569
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences7297661
Sequences flagged as poor quality0
Sequence length51
%GC41

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[OK]Sequence Duplication Levels

Duplication level graph

[OK]Overrepresented sequences

No overrepresented sequences

[OK]Adapter Content

Adapter graph

[WARN]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
TGACGCG550.003941684520.45171421
CGTTGGA22000.014.3835131
AACGGGA19550.013.5776618
ACGGGAT13750.013.4153149
AAACGGG23950.012.8679017
CGGGATT12900.012.72983610
GAAACGG24700.012.4821356
GGAAACG25050.011.6788725
TCGTTAC1954.930786E-410.38239625
ACAGGCG24150.09.50179118
CGGGAAT9050.09.44549410
CGGGATA3155.6888384E-69.2837310
CCTCGAA4152.536217E-89.2589241
CGTGAGC17000.09.13040123
GCCACCG16350.08.94518728
GCGTGAG17150.08.91937522
CCCGAAT6900.08.8445211
CGAGAAT3951.1490829E-68.5832911
CCCGAAG3951.1490829E-68.5832911
ACGGGTT3704.6969053E-68.5116949
Produced by FastQC (version 0.11.5)