FastQCFastQC Report
Sat 23 Apr 2022
EGAF00006070573

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00006070573
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences7743161
Sequences flagged as poor quality0
Sequence length51
%GC41

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[OK]Sequence Duplication Levels

Duplication level graph

[OK]Overrepresented sequences

No overrepresented sequences

[OK]Adapter Content

Adapter graph

[FAIL]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
CGTTGGA21650.014.90253451
AAACGGG21400.013.6661987
AACGGGA17100.013.5510618
GAAACGG21900.013.3537536
GGAAACG24450.012.3290625
AACGGGT5050.012.0283088
CGGGAAT8850.011.44023810
ACGGGAT13150.011.2921959
CGGGATT12000.011.24956710
ACGGGAA8500.011.1170769
ACCGTGC7000.010.28578431
GTCGCTC2057.7949115E-49.8781162
CGCGCCC4355.693437E-109.82765333
ACAGGCG25900.09.72816218
GCGTGAG18000.09.37512422
CGCCCGG9100.09.14729135
CGTGAGC18750.09.1201223
CCGGCTA9150.09.09754138
ACGGGTT4956.1299943E-109.0904429
GCCACCG17250.09.00000328
Produced by FastQC (version 0.11.5)