FastQCFastQC Report
Sat 23 Apr 2022
EGAF00006070575

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00006070575
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences6326492
Sequences flagged as poor quality0
Sequence length36
%GC40

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[OK]Sequence Duplication Levels

Duplication level graph

[OK]Overrepresented sequences

No overrepresented sequences

[OK]Adapter Content

Adapter graph

[FAIL]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
CGTTGGA13900.012.5386761
ACGGGAT9450.012.0642339
GAAACGG15650.011.3141776
GCGTGAG10250.011.26640122
AAACGGG16300.011.2276837
AACGGGA13200.011.1370478
GATCGGA1355.562228E-511.12947751
CGGGATT9000.011.00067510
CACCGCG2853.8198777E-1110.524549530
GGAAACG16450.010.3972555
CGTGAGC11400.010.39299323
ACAGGCG15000.09.99832218
CACCACG11600.09.82593730
CGTAGGA1552.2520877E-49.6934161
AACGGGT3451.4551915E-119.56580458
ATCGGAA1952.3866622E-59.2322852
GGCGTGA12400.09.19200521
AGGCGTG13500.09.10958220
GAGCCAC30700.09.03757226
CCCAAAG51150.09.0178141
Produced by FastQC (version 0.11.5)