FastQCFastQC Report
Sat 23 Apr 2022
EGAF00006070587

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00006070587
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences10795408
Sequences flagged as poor quality0
Sequence length51
%GC40

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[OK]Sequence Duplication Levels

Duplication level graph

[OK]Overrepresented sequences

No overrepresented sequences

[OK]Adapter Content

Adapter graph

[FAIL]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
TATGCCG5900.025.93119645
TCTCGTA7400.020.97949840
CTCGTAT7300.020.95915841
ACGGCTA7200.020.6269731
CGGCTAC7800.019.61616932
CGTATGC7800.019.03825243
TCGTATG8800.017.38665642
ATCTCGT9150.016.96781239
GTCACGG9550.016.02202828
ATCGGAA10100.015.3761041
ACACGTC10300.015.29081212
CATCTCG10800.015.20887138
TCGGAAG10950.014.3844022
CGTCTGA11400.013.61650615
TCACGGC11100.013.58275629
CACGGCT11700.013.07853530
CGTTGGA31550.013.0548031
CGGAAGA12300.012.9886263
AGTCACG11300.012.94341527
AAACGGG33050.012.3216477
Produced by FastQC (version 0.11.5)