FastQCFastQC Report
Sat 23 Apr 2022
EGAF00006070607

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00006070607
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences7178027
Sequences flagged as poor quality0
Sequence length51
%GC42

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[OK]Sequence Duplication Levels

Duplication level graph

[OK]Overrepresented sequences

No overrepresented sequences

[OK]Adapter Content

Adapter graph

[FAIL]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
CGTTGGA20000.014.7935871
ACGGGAT14150.012.2363889
CGGGATT13350.012.12755410
AACGGGA18400.012.0986348
AAACGGG21650.011.7365257
GAAACGG22400.011.5443316
CCCGAAA2951.6467311E-811.4842171
GGAAACG23700.010.5773395
CGCGCCC5750.010.16929933
ACCGCGC6300.09.99539531
GATTTCG7700.09.6788785
CGGGAAT7250.09.6149210
CACCGCG7050.09.57019330
CCGCGCC7550.08.63846532
ATCGCGC2350.00272182458.61239338
CCCGTAA2658.155011E-48.5228781
GATCGCG2450.00396678468.26086737
ACCCGGC6603.092282E-118.17793736
CCCGATG2500.0045802158.1300872
CGCCCGG8300.08.12884235
Produced by FastQC (version 0.11.5)