FastQCFastQC Report
Sat 23 Apr 2022
EGAF00006070638

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00006070638
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences6798257
Sequences flagged as poor quality0
Sequence length36
%GC40

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[OK]Sequence Duplication Levels

Duplication level graph

[OK]Overrepresented sequences

No overrepresented sequences

[OK]Adapter Content

Adapter graph

[FAIL]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
CGTTGGA18350.013.7546971
ACGGGAT12000.013.1205319
AAACGGG19600.012.5467467
AACGGGA16500.012.2685488
GAAACGG19400.012.2161086
CGGGATT11750.012.12352910
GGAAACG20150.011.8507635
CCTCGAT1355.566376E-511.128691
CCCCGAT1901.2990131E-711.0701181
CCCCGTT2556.2391337E-1010.6049871
CCCCGAA2002.9872372E-69.7654261
CGAAGAT4950.09.7123121
GATCGGA1409.5825666E-49.65811351
AACGGGT4600.09.4533018
GCGTGAG13100.09.38611622
GCCACCG10500.09.28255328
ACAGGCG16650.09.27611918
CGTGAGC13600.09.26155123
CGGGATA1952.4010045E-59.22762610
CCCAAGT22700.09.19955351
Produced by FastQC (version 0.11.5)