FastQCFastQC Report
Sat 23 Apr 2022
EGAF00006070651

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00006070651
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences11546245
Sequences flagged as poor quality0
Sequence length51
%GC41

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[OK]Sequence Duplication Levels

Duplication level graph

[OK]Overrepresented sequences

No overrepresented sequences

[OK]Adapter Content

Adapter graph

[FAIL]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
CGTTGGA32450.013.74926951
AACGGGA26550.013.1359088
AAACGGG31750.013.0388367
ACGGGAT19600.012.8574519
GAAACGG34250.012.1527866
CGCGCCC6300.012.14235933
CGGGATT19150.011.98462110
GGAAACG35050.011.5547985
ACCGCGC8650.011.44441931
CCGCGCC8700.011.12004132
CACCGCG8950.011.06099930
TATGCCG3805.7298166E-1010.6569545
CGCCCGG10050.010.52195635
CGGGAAT12200.09.40596410
CGACTTA1950.0057309319.22995118
CCGGCTA10900.09.08235438
CGGCTAA11100.08.91870839
CGTATAG3155.6171128E-58.58421
ACAGGCG37850.08.38102718
CCCTAGT17500.08.3695951
Produced by FastQC (version 0.11.5)