FastQCFastQC Report
Sat 23 Apr 2022
EGAF00006070659

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00006070659
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences8049117
Sequences flagged as poor quality0
Sequence length51
%GC41

[OK]Per base sequence quality

Per base quality graph

[FAIL]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[OK]Sequence Duplication Levels

Duplication level graph

[OK]Overrepresented sequences

No overrepresented sequences

[OK]Adapter Content

Adapter graph

[FAIL]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
CGTTGGA22250.015.7877811
AACGGGA20050.014.0265118
ACGGGAT14500.013.9646029
CGGGATT13800.013.53172110
AAACGGG23950.013.5274657
GAAACGG24400.013.0943786
ACGCCCG3355.456968E-1212.76011934
GGAAACG25300.012.2728385
CGCCCGG7000.012.21325835
CGTATGC3703.601599E-1010.94645245
CGGGAAT9400.010.7705710
ACCGCGC5900.09.91540531
CCGCGCC6700.09.73840932
CGCGCCC4904.9112714E-119.64246533
AACGGGT5201.6370905E-119.5186078
TATCTCG3155.6797526E-69.28493240
GCCCGGC15450.09.17398536
CGCCTGG11300.09.15852135
ACCACGC14250.09.00013631
CCCGAGT21900.08.8426181
Produced by FastQC (version 0.11.5)