FastQCFastQC Report
Sat 23 Apr 2022
EGAF00006070661

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00006070661
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences6159702
Sequences flagged as poor quality0
Sequence length36
%GC41

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[OK]Sequence Duplication Levels

Duplication level graph

[OK]Overrepresented sequences

No overrepresented sequences

[OK]Adapter Content

Adapter graph

[FAIL]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
CGTTGGA14900.013.5149941
AACGGGA12800.012.5367618
ACGGGAT9600.012.3414869
GATCGGA1601.676035E-712.210141
AAACGGG16000.011.9977997
GAAACGG16100.011.8302236
GGAAACG15550.011.7757935
CGTTAAT1756.4786745E-610.3048221
CGGGATT9500.010.26127510
CGGGAAT4850.010.20431310
CGTCTGA2251.2604687E-79.99816616
CGGGATA2251.2604687E-79.99816610
CCCAAGT21650.09.3707251
CGTGAGC11450.09.29960423
ACAGGCG17300.09.18906618
GCGTGAG11600.09.1793522
ATCGGAA2301.7979328E-69.1381062
CCCTAAA15500.09.1136731
CCGAGTA6650.09.0301372
CCCGGAA2105.5916877E-58.5873531
Produced by FastQC (version 0.11.5)