FastQCFastQC Report
Sat 23 Apr 2022
EGAF00006070676

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00006070676
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences9119682
Sequences flagged as poor quality0
Sequence length51
%GC41

[OK]Per base sequence quality

Per base quality graph

[FAIL]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[OK]Sequence Duplication Levels

Duplication level graph

[OK]Overrepresented sequences

No overrepresented sequences

[OK]Adapter Content

Adapter graph

[FAIL]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
CGTTGGA27100.014.971051
CGTCCGA950.00537518514.2123646
CGGGATT16050.013.17558910
AAACGGG28250.012.8210817
ACGGGAT17600.012.6543479
ACCGCGC7050.012.44493831
GAAACGG30800.012.3473766
AACGGGA22800.012.13633258
GGAAACG31750.011.4881625
CACCGCG8000.010.96710130
CCGCGCC7650.010.58664232
CCCCGAT2801.2319215E-610.4648821
CGCGCCC5000.010.34844433
AACGGGT7500.010.1984678
CGTCAAA4904.7293724E-119.6598911
GCCACCG19900.09.60910828
CGTGAGC21550.09.39533923
GCGTGAG21850.09.36930122
CGCCCGG9450.09.28431835
ACGGGTT6600.09.2031619
Produced by FastQC (version 0.11.5)