FastQCFastQC Report
Sat 23 Apr 2022
EGAF00006070688

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00006070688
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences7902838
Sequences flagged as poor quality0
Sequence length51
%GC41

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[OK]Sequence Duplication Levels

Duplication level graph

[OK]Overrepresented sequences

No overrepresented sequences

[OK]Adapter Content

Adapter graph

[FAIL]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
CGTTGGA24750.015.226931
ACGGGAT16500.014.72561559
AACGGGA23200.013.6730318
AAACGGG27450.013.5230697
CGCGCCC5200.013.41237733
ACCGCGC6200.013.0634631
CACCGCG6600.012.95349830
CGCCCGG8450.012.77995135
GGAAACG28700.012.7773085
CGGGATT16300.012.55993710
GAAACGG30450.012.042986
CCGCGCC6950.011.97760132
CGTCTAG2056.218669E-511.00822451
ACGGGTT5000.010.3488369
GCCACCG18400.010.27136328
GCCCGGC18500.09.85055436
AACGGGT5800.09.6971858
ACGCCCG4458.62201E-109.60596534
TGCCCGG10350.09.34701235
GCGCCCG6800.09.26395734
Produced by FastQC (version 0.11.5)