FastQCFastQC Report
Sat 23 Apr 2022
EGAF00006070695

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00006070695
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences4580681
Sequences flagged as poor quality0
Sequence length51
%GC41

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[OK]Sequence Duplication Levels

Duplication level graph

[OK]Overrepresented sequences

No overrepresented sequences

[OK]Adapter Content

Adapter graph

[WARN]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
CGTCAAA1953.8382906E-511.5417091
CGTTGGA10750.011.0961461
GAAACGG13000.010.5582436
ACGGGAT7500.010.4992879
AAACGGG12800.010.3711827
CGTAAGA2402.7702143E-510.3154021
AACGGGA10900.09.4947688
CGTGCAA1900.0046121249.4763511
CGGGATT7200.09.37436410
AACGGGT2658.248089E-59.3389888
GGAAACG13350.09.1015985
ACAGGCG15400.08.91173318
CCCAAGT22350.08.7608551
CCTAGAT9350.08.6655411
TACAGGC37450.08.65094717
CGATAAT3155.6947752E-58.5738411
CCCTTAA11350.08.52662851
GCCACCG10350.08.47768528
CCCAAAG48550.08.390621
ACCGTGC3806.7065976E-68.28900131
Produced by FastQC (version 0.11.5)