FastQCFastQC Report
Sat 23 Apr 2022
EGAF00006070746

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00006070746
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences11116782
Sequences flagged as poor quality0
Sequence length51
%GC39

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[OK]Sequence Duplication Levels

Duplication level graph

[OK]Overrepresented sequences

No overrepresented sequences

[OK]Adapter Content

Adapter graph

[FAIL]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
TATGCCG3350.019.47621345
CGTCCGA1250.002255315412.5987566
CGTTGGA36150.012.4036361
AAACGGG38100.011.4555627
AACGGGA31250.011.3752358
ACGCCCG4550.011.37419234
GAAACGG38550.010.971686
CTCGTAT5750.010.95622841
ACGGGAT22800.010.9532119
CGATGTA6250.010.79995333
CGCCCGG8600.010.72742235
GGAAACG39450.010.6073185
TCTCGTA6400.010.54730440
GTCACCG7750.010.45133328
CGGGATT22300.010.39167810
ACCGATG6800.010.25684731
AACGGGT7300.010.1705488
GCCCGGC19300.09.90995236
CCGATGT6700.09.73832632
CGTATGC6700.09.73801943
Produced by FastQC (version 0.11.5)