FastQCFastQC Report
Sat 23 Apr 2022
EGAF00006070754

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00006070754
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences6596919
Sequences flagged as poor quality0
Sequence length51
%GC41

[OK]Per base sequence quality

Per base quality graph

[FAIL]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[OK]Sequence Duplication Levels

Duplication level graph

[OK]Overrepresented sequences

No overrepresented sequences

[OK]Adapter Content

Adapter graph

[FAIL]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
CGTTGGA19850.015.2324561
AACGGGA17100.014.2047058
AAACGGG19800.014.1993717
ACGGGAT13150.014.1951669
GAAACGG21150.013.5059226
CGGGATT12000.012.9317110
GGAAACG22250.012.5735495
CGAAACG1454.7437387E-412.4476745
CGGGATA2901.3618774E-811.63272310
ACAGGCG23300.09.94190118
CGGCTAA6500.09.68877839
CCGGCTA6050.09.66516838
CGCCCGG7350.09.48554935
AACGGGT4102.257184E-89.3254478
CGGGAAT7750.09.28616510
CCCGAAT6600.09.230931
GATTTCG8400.09.1319985
ACGCCCG3502.2239274E-68.99597334
CGCGCCC4001.5371006E-78.99597333
GCCACCG14900.08.90696128
Produced by FastQC (version 0.11.5)